Entering edit mode
2.9 years ago
Fede_Santos95
▴
10
Hi guys, I'm performing Multi-Trait Analysis of GWAS (mtag) (see the following link: https://github.com/JonJala/mtag
After running the command:
python ./mtag.py --sumstats Sumstats/PGC_UKB_depression_genome-wide_mtag.txt,Sumstats/CRP_UKBB.imputed_v3.both_sexes_mtag.txt --out ./MDD_vs_CRP --n_min 0.0 --snp_name SNP --use_beta_se --beta_name BETA --se_name SE --force --maf_min 0.01 --stream_stdout --fdr --stream_stdout &
I found the following error message:
2021/06/03/10:48:00 AM attempt to get argmax of an empty sequence
Traceback (most recent call last):
File "./mtag.py", line 1567, in <module>
mtag(args)
File "./mtag.py", line 1455, in mtag
fdr(args, Ns, Zs)
File "./mtag.py", line 1269, in fdr
ind_max = np.argmax(FDR, axis=0)
File "/home/platone1/.local/lib/python2.7/site-packages/numpy/core/fromnumeric.py", line 1103, in argmax
return _wrapfunc(a, 'argmax', axis=axis, out=out)
File "/home/platone1/.local/lib/python2.7/site-packages/numpy/core/fromnumeric.py", line 56, in _wrapfunc
return getattr(obj, method)(*args, **kwds)
ValueError: attempt to get argmax of an empty sequence
2021/06/03/10:48:00 AM Analysis terminated from error at Thu Jun 3 10:48:00 2021
2021/06/03/10:48:00 AM Total time elapsed: 10.0m:9.81s
How can I overcome this error? May it be linked to python ?
Maybe this issue on their
GitHub
repo is relevant?