How to change various SNP identifiers into rsID in Plink.
0
0
Entering edit mode
3 months ago
geno89 ▴ 10

My .bim file looks like this

1       chr1_847228_C_T       847228  A       G
1       rs1806509             853954  C       A
1       chr1_854250_A_G       854250  G       A
1       rs13302982            861808  A       G
1       chr1_864757_A_G       864757  G       A
1       chr1_864938_A_G       864938  G       A
1       rs2880024             866893  A       G
1       chr1_867635_C_T       867635  A       G
1       chr1_869303_C_T       869303  A       G
1       chr1_873558_G_T       873558  C       A
1       exm2275405           879439  A       G

It can be seen that SNPs identifiers used are inconsistent. I want all the SNP ids into rsID format. How can i do this preferably in plink or in R?

Chromosome SNP position Plink rsid • 152 views
ADD COMMENT

Login before adding your answer.

Traffic: 1690 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6