Convert UCSC isoform ID to Ensembl transcript ID
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6 weeks ago
science03 • 0

Hello everyone,

I have a few UCSC isoform IDs and I would like to convert them to the corresponding Ensembl transcript IDs. I have tried to use some online conversion tools (such as DAVID), looked up the UCSC annotation files, but couldn't yield any successful results. The IDs are part of Human hg19 genome assembly. Could anyone, please, help me with this problem?

PS: Thank you in advance!

My id list:

uc010qbi.2

uc010qbj.1

uc001iki.4

uc001ikk.2

uc001ikl.4

uc010qbk.1

uc010qbl.1

uc010qbm.1

uc001iko.4

uc001ikp.4

uc009xiw.1

uc010qbo.1

uc010qbp.1

Rna-seq Ensembl Genomics assembly UCSC • 194 views
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Sidenote: UCSC is not using these IDs anymore and has moved to Ensembl IDs. See https://genome.ucsc.edu/FAQ/FAQgenes.html#hg19 Also, the UCSC support list can be reached at genome@soe.ucsc.edu.

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thank you it is very useful!

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