I have a small question on the build-up of a database in Kraken2 ref-seq.
When I ran out all of the ref-seq databases in kraken2 like that
kraken2-build --download-library bacteria(including fungi and virus) --db $DBNAME. But unfortunately, I can't find some of the bacteria which I'm interested in (e.g. PJP Pneumocystis pneumonia). Have anyone meet the same problem ?