How can I solve unknown OTU ids: {1}". Error in PICRUST _Galaxy(Huttenhower lab)
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5 months ago

I am trying to run PICRUST which is available in galaxy (Huttenhower lab) and getting error in normalize step.

How can I resolves this error?

> Traceback (most recent call last):   File
> "/galaxy-central/tools/picrust/scripts/normalize_by_copy_number.py",
> line 146, in <module>
>     main()   File "/galaxy-central/tools/picrust/scripts/normalize_by_copy_number.py",
> line 98, in main
>     count_table = convert_precalc_to_biom(count_table_fh,ids_to_load)   File "/galaxy_venv/local/lib/python2.7/site-packages/picrust/util.py",
> line 87, in convert_precalc_to_biom
>     raise ValueError,"One or more OTU ids were not found in the precalculated file!\nAre you using the correct --gg_version?\nExample
> of (the {0}) unknown OTU ids: {1}".format(len(ids_to_load),',
> '.join(list(ids_to_load)[:5])) ValueError: One or more OTU ids were
> not found in the precalculated file! Are you using the correct
> --gg_version? Example of (the 631) unknown OTU ids: 1868, 2100, 1948, 1943, 1941
PICRUST python • 310 views
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Are you using the correct  --gg_version? Example of (the 631) unknown OTU ids: 1868, 2100, 1948, 1943, 1941
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