Entering edit mode
2.8 years ago
twinklemishra0892
▴
10
I am trying to run PICRUST which is available in galaxy (Huttenhower lab) and getting error in normalize step.
How can I resolves this error?
> Traceback (most recent call last): File
> "/galaxy-central/tools/picrust/scripts/normalize_by_copy_number.py",
> line 146, in <module>
> main() File "/galaxy-central/tools/picrust/scripts/normalize_by_copy_number.py",
> line 98, in main
> count_table = convert_precalc_to_biom(count_table_fh,ids_to_load) File "/galaxy_venv/local/lib/python2.7/site-packages/picrust/util.py",
> line 87, in convert_precalc_to_biom
> raise ValueError,"One or more OTU ids were not found in the precalculated file!\nAre you using the correct --gg_version?\nExample
> of (the {0}) unknown OTU ids: {1}".format(len(ids_to_load),',
> '.join(list(ids_to_load)[:5])) ValueError: One or more OTU ids were
> not found in the precalculated file! Are you using the correct
> --gg_version? Example of (the 631) unknown OTU ids: 1868, 2100, 1948, 1943, 1941
Did you investigate the last line?