Computing Tajima's D from haploid SNPs
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4 months ago
drowl1 ▴ 30

Hi all!

I have a set of haploid SNPs that I would like to compute their Tajima's D and it appears that my first choice tool VCFtools only computes this value for diploid data.

Has anyone worked around this challenge before, or is there some other tool that can easily compute Tajima's D on haploid SNPs?

Haploid SNPs • 182 views
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I am not 100% sure, but maybe DNAsp6 can do than http://www.ub.edu/dnasp/DnaSP6_Documentation_6.12.pdf

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