Validate input file as BED file
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4 months ago
rrapopor ▴ 30

Hi,

I'm looking for a way to validate that an input file to R is a correct BED file. I don't really mind about the file separator, but I want to make sure that I have 3 columns, 1 is "chrX" and the 2 others are numbers, where the second column is smaller than the the third.

Any suggestions?

Thanks!

R BED • 244 views
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I never used it but bedr may help you.

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An useful tool for reads most of the bioinformatic files is rtracklayer, you can use it as import("yourfile", format="bed")

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