Is there a way to convert ONT longread/illumina fastq to fasta file
Using reformat.sh from BBMap suite
reformat.sh -Xmx4g in=your.fastq out=your.fa qin=33
If you have paired-end Illumina data then use
reformat.sh -Xmx4g in1=R1.fq.gz in2=R2.fq.gz out1=R1.fa out2=R2.fa
IDBA assembler has a utility called fq2fa that does what you want.
Login before adding your answer.
Use of this site constitutes acceptance of our User Agreement and Privacy