WGCNA for RNA-SEQ DATA

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4.4 years ago

pratimakumaritara ▴ 10

I am doing WGCNA and during fifth script i.e Network visualization using WGCNA functions got this error Error in x[, iy] : subscript out of bounds.Can you suggest how to solve this error. Thanks for your response.

Transform dissTOM with a power to make moderately strong connections more visible in the heatmap

> plotTOM = dissTOM^7
> # Set diagonal to NA for a nicer plot
> diag(plotTOM) = NA
> # Call the plot function
> sizeGrWindow(9,9)
NULL
> TOMplot(plotTOM, geneTree, moduleColors, main = "Network heatmap plot, all genes")
Error in x[, iy] : subscript out of bounds

RNA-Seq R wgcna • 1.6k views

ADD COMMENT • link updated 2.8 years ago by demoraesdiogo2017 ▴ 100 • written 4.4 years ago by pratimakumaritara ▴ 10

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pratimakumaritara this should not go under "Tutorial" category. I have changed it to "Question". "Tutorial" should be used when you are trying to teach us something.

ADD REPLY • link 4.4 years ago by lakhujanivijay 5.8k

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hello did you come up with a solution?

ADD REPLY • link 2.8 years ago by demoraesdiogo2017 ▴ 100

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