I'm trying to run Emmax on a small data set, but I keep getting this error:
evals[0] = nan, evals[1] = nan, evals[n-1] = nan FATAL ERROR : Minimum q eigenvalues of SKS is supposed to be close to zero, but actually 179769313486231570814527423731704356798070567525844996598917476803157260780028538760589558632766878171540458953514382464234321326889464182768467546703537516986049910576551282076245490090389328944075868508455133942304583236903222948165808559332123348274797826204144723168738177180919299881250404026184124858368.000000 FATAL ERROR : k = 70 > n-q = 69 Aborted (core dumped)
Does anyone know how I can overcome this error?
I used this basic code on converted plink files: emmax -v -d 10 -t [tped_prefix] -p [pheno_file] -k [kin_file] -o [out_prefix]