Chipseq density plot between two grops of genes
Entering edit mode
12 weeks ago

Hello I have Chipseq data(.bam file) from this I have normalized my bam file BPM method and created the density plot using deeptools, density plot i have created for two group of genes (Genes of interest) group of genes are different number in density plot is it effect the interpretation of the data? because gene number are 70 group1 and 30 group2

in this step is it necessary to do peak calling? using only significant peaks i have to do the density plot

And any R related tools alternative to deeptools for density plot? any suggestions

Thank you

Density Deeptools plot Chip-seq • 129 views

Login before adding your answer.

Traffic: 1116 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6