Chipseq density plot between two grops of genes
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12 weeks ago

Hello I have Chipseq data(.bam file) from this I have normalized my bam file BPM method and created the density plot using deeptools, density plot i have created for two group of genes (Genes of interest) group of genes are different number in density plot is it effect the interpretation of the data? because gene number are 70 group1 and 30 group2

in this step is it necessary to do peak calling? using only significant peaks i have to do the density plot

And any R related tools alternative to deeptools for density plot? any suggestions

Thank you

Density Deeptools plot Chip-seq • 129 views
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