Hi,
I did analysis in IPA (Ingenuity Pathway Analysis) on RNA-Seq data. I have my pathways but I would like to know what genes are present in particular Canonical Pathway. The ratio says for example 8/240 (8 genes from my dataset, 240 genes for the whole pathway). I am interested in these 240 genes. Where can I find them?
Export the pathway data to get the list of genes belonging to a particular pathway form your gene list. To get all the genes related to a pathway just search the pathway name in the top search bar and you will get the complete list.
From Summary table of results --> Top Canonical Pathways --> Select Pathway you are interested in --> A new window opens --> Find Open Pathway button to the right under the bar graph --> Pathway opens in a new window --> Under Export (top row of icons) find second button for Export Data --> Select All Molecules (default) --> Save Tab delimited text file by providing a name.
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version 2.3.6
Is there a way to export just the genes from our dataset? I do not want all the genes from the pathway, rather just the genes that are part of my dataset which are involved in the pathway.
That information is generally shown in tables etc. Number of genes from your list that are present in the pathway.