High throughput protein structure homology prediction

Question

[francesco.costa.11]

Hello everybody, I need to obtain as much more as possible protein homology structures (.pdb) from a few hundred genes of Rattus norvegicus. Do someone know if is there a way to obtain this structures in an high-throughput manner? Any local/web-based program or Python/R module would be great.

Answer 1

[Mensur Dlakic]

There is a good chance that models for your proteins may already exist:

• https://modbase.compbio.ucsf.edu/
• https://swissmodel.expasy.org/repository

Or you can use the links below to model them:

• https://modbase.compbio.ucsf.edu/modweb/
• https://swissmodel.expasy.org/

[francesco.costa.11]

Thank you very much! I found all I needed in the salilab database.

[GenoMax]

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