I'm performing an metatranscriptomics study. I'm using rnaviralspades and in the workflow I need to use viralverify after assembling the reads with rnaviralspades. To use viralverify, this is the script provided :
./viralverify.py -f Input fasta file -o output_directory --hmm HMM Path to HMM database
My question is :
For the database required for --hmm argument, should I download the whole files and directories in Pfm34.0 directory of this link : http://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam34.0?