I am using scran / scuttle for scRNAseq normalization.
clusters <- scran::quickCluster(sce) sce <- scran::computeSumFactors(sce, cluster = clusters) sce <- scuttle::logNormCounts(sce)
As far as I could find out, this code will log2 transform data. I was wondering if there is any option to specify log transformation to another log base, particularly natural log?
Or would it be possible to reverse log2 transformation after the normalization and then manually transform to natural log?
Thank you very much in advance!
PS: Cross posted on https://github.com/LTLA/scuttle/issues/12