to find a suitable paper with publicly available RNAseq dataset. My recommendations are:
- Human or mouse data
- Cancer phenotype
- SE or PE RNAseq with read length 100 or 150 bp
- 5 replicates per group
- 25-50 million read per sample
How can i know number of replicates?!
I would start with MetaSRA https://metasra.biostat.wisc.edu/ and maybe think about the specific type of cancer and cell type
Newer papers are more likely to have the read length and depth you need. I just noticed there are no dates in MetaSRA which is annoying but the API will reveal more SRA metadata.
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