how to get effect sizes (R2) in result of GEMMA?

Question

[Kumar]

Hi All, Please let me know if there is a way to get effect sizes (R2) from the results of GEMMA (http://gensoft.pasteur.fr/docs/GEMMA/0.98.1/manual.pdf)? I am calculating univariate linear mixed model analysis using GEMMA but not sure how to get R2 in the result.

These following columns are in my result file.

chr rs  ps  n_miss  allele1 allele0 af  beta    se  logl_H1 l_remle p_wald