how to get effect sizes (R2) in result of GEMMA?
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10 months ago
Kumar ▴ 130

Hi All, Please let me know if there is a way to get effect sizes (R2) from the results of GEMMA (http://gensoft.pasteur.fr/docs/GEMMA/0.98.1/manual.pdf)? I am calculating univariate linear mixed model analysis using GEMMA but not sure how to get R2 in the result.

These following columns are in my result file.

chr rs ps n_miss allele1 allele0 af beta se logl_H1 l_remle p_wald

SNP size GEMMA multivariate effect • 409 views
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