Issue installing Plink
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3 months ago
AndrMod • 0

I am trying to install Plink on an Ubuntu 20.04.

My compilers are

  • g++
  • g++-9
  • gcc
  • gcc-9

In the Plink makefile, I only specified the g++ as CXX_UNIX*.

when I run make inside the proper folder, installation starts, the get aborted with the messages

sets.cpp:771:37: error: redeclaration of ‘std::vector<Individual*>::iterator i’
  771 |       vector<Individual*>::iterator i = PP->sample.begin();

and

sets.cpp:703:12: note: ‘int i’ previously declared here
703 |   for (int i=0; i<snpset.size(); i++)

Eventually it calls for an Error 1.

I don't know what's going on.

I also changed the makefile by indicating the full path of g++, but it does not solved the issue.

Ha someone any clue on it which can help?

I'd be very grateful.

Plink • 369 views
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Can you try installing it using conda? That should take care of all dependencies for you.

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Or even easier, download the pre-compiled binaries? https://zzz.bwh.harvard.edu/plink/download.shtml

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You just saved my day

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I don't know how to use conda, but thanks: I will give it a look. At least I'd have learned something more.

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Evetually I did't manage to install ia conda, but it's here on the laptop and someday will come in handy. Still thanks a lot!

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