Annotating an assembly according to alignment against a reference genome
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3 months ago
langziv ▴ 20

Hi.

I aligned the assembly against the reference with blastn. Is there a program that take this alignment and annotate the assembly according to the blastn output and save if as a GFF file?

genbank annotation alignment • 189 views
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3 months ago
Mensur Dlakic ★ 14k

Liftoff can do that, but you will need minimap2.

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