COVID 19 analysis workflow

Question

[sa.youssef]

We are looking for a bash scripting workflow to differentiate between 1st, 2nd, and 3rd waves of COVID 19 in Africa as we are going to make MSA, BLAST, study the evolutionary relationship, and designing primers Can anyone help?

Answer 1

[GenoMax]

See answer in :
COVID-19 analysis pipelines
SARS Cov2 NGS data analysis pipeline

https://github.com/artic-network/artic-ncov2019