How to show that one docking is better than another with Pymol visually
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3 months ago
gundalav ▴ 360

I have the following docking results:

Dock_1 has better energy score than Dock_2. What I want to do is to show with Pymol that Dock_1 is better visually.

Here I use hydrogen bond, highlighted with Yellow (Dock_1) and Gray (Dock_2). But as you can see, with that I can't show that Dock_1 is clearly better. That's why I'm looking for better alternative than hydrogen bond.

enter image description here

docking structure pymol pdb • 120 views
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