I have a list of genes and ID's for which I hope to download the cDNA pairwise sequence alignment for human and mouse. Currently this is possible manually by searching the gene in ensembl > selecting the human gene > going to orthologues > finding mouse > selecting 'view sequence alignments' > view cDNA Alignment > Download homology > download Fasta.
I am trying to download these alignments in bulk, but I am not really sure how to do this. Using this link, I can get to the alignment:
However, I am struggling to export it to fasta format because it appears that the download link creates a temporary file which I cannot determine:
Is there any way to bypass this issue? Thanks.