Hello, I am using the VEP tool (version 104) and already managed to annotate a VCF-file (hg19) with basic annotations and CADD. Furthermore I wanted to annotate it with the REVEL plugin. So I downloaded the plugin, as well as the data for REVEL (and preprocessed it according to the information given at the vep website https://m.ensembl.org/info/docs/tools/vep/script/vep_plugins.html).
The following error occurs now when running VEP:
Use of uninitialized value $assembly in hash element at /.vep/Plugins/REVEL.pm line 112. Use of uninitialized value in string eq at /home/username/.vep/Plugins/REVEL.pm line 112.
and here is the "REVEL-part" of my vep command:
and here is the header of the REVEL file after preprocessing it:
#chr hg19_pos grch38_pos ref alt aaref aaalt REVEL Ensembl_transcriptid
Coud someone tell me please how to solve this issue?
Many thanks in advance!