Combining two vcf files
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3.0 years ago
raalsuwaidi ▴ 100

How do I combine two different vcf files for separate populations?

Vcf GWAS • 671 views
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VCF File Merger can do it for you. This is also a repeat query from Biostars.

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Thanks. I looked at the other response and tried bcftools. But the genotype values change to be missing. I will try vcf file merger, but do you know if it comes with bio conda?

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