Hi all, I'm trying to download all bacterial genomes from ensembl so I can further mine them for bacteriocin gene clusters. However I've been struggling and was hoping someone could advise? Any time I attempt the wget command on the index URL below I get results like "index.html". I've also tried things like wget ftp://ftp.bacteria.ensembl.org/species but no luck.
Can someone please advise on the steps I should take in order to be able to pull all genomic sequences from a database from the command line via ftp, preferably in gbk, gff, or fasta format.
Any help is greatly appreciated!