I am new to genomic sequencing and annotation and I have a genome that I was to bioinformatically check for plasmids.
I have PlasmidFinder installed, but my genome is Acinetobacter - and I don't think the database is appropriate (there is gram-positive and general eneterobacteria DB only).
Searching online I found PlasmidSeeker - the latesr db includes a list of Acinetobacter plasmids - is this the right/best tool for my analysis? Is there a better tool?
Any help would be appreciated,