Bioinformatic tool for acinetobacter plasmids

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2.8 years ago

blur ▴ 280

Hi,

I am new to genomic sequencing and annotation and I have a genome that I was to bioinformatically check for plasmids.

I have PlasmidFinder installed, but my genome is Acinetobacter - and I don't think the database is appropriate (there is gram-positive and general eneterobacteria DB only).

Searching online I found PlasmidSeeker - the latesr db includes a list of Acinetobacter plasmids - is this the right/best tool for my analysis? Is there a better tool?

Any help would be appreciated,

plasmidseeker plasmidfinder plasmid • 932 views

ADD COMMENT • link 2.8 years ago by blur ▴ 280

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https://academic.oup.com/nar/article/47/D1/D195/5149885 https://academic.oup.com/bioinformatics/article/32/22/3380/2525610 https://www.frontiersin.org/articles/10.3389/fmicb.2017.00182/full

You can read a few recent article about plasmid identification.

ADD REPLY • link 2.8 years ago by MSRS ▴ 580

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Thanks! That's very helpful

ADD REPLY • link 2.8 years ago by blur ▴ 280

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