Entering edit mode
20 months ago
dpc ▴ 240
I have a list of bacterial gene names like this:
fau folA folM lpd gcvP gcvH gcvT thyA glyA folD folD metF metH
Now, I want to get the corresponding GO terms of each of these genes. How can I get that? Can anyone please help me?
Geneontology can assist you but you have to know the organisation name here. DAVID is also a good option.
Previous answers: gene GO ID
Command line: Gene Set Clustering based on Functional annotation (GeneSCF)
Thanks MSRS for your reply. But, my gene list comes from metagenome. I cannot specifically tell from which orgaism it is coming. What to do in such case?
Why don't you try MG-RAST for metagenome functional analyses!
Please accept the answer if you find it helpful.
Look MSRS, actually in metagenome a gene comes from a number of different organism. SO, even if I use MGRAST, it will not help me. ALso, I don't have fastq sequences in my hand so that I can run MGRAST.
How did you find these gene list?
Hi MSRS, I got this from MetaCyc database. Anyway, Is it possible to somehow get the KO IDs from this list of genes?