0
votes
0
replies
8
views
9
votes
12
replies
206
views
0
votes
0
replies
17
views
0
votes
0
replies
26
views
updated 39 minutes ago by
GenoMax
141k
•
written 1 hour ago by
N.Y.Wiyana-Hewage
•
0
795
votes
167
replies
141k
views
109 follow
updated 12 weeks ago by
Biostar
2.6k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
2
replies
82
views
0
votes
2
replies
77
views
0
votes
1
reply
40
views
2
votes
2
replies
251
views
updated 5 hours ago by
shelkmike
★
1.2k
•
written 13 hours ago by
kirillkirilenko
▴
30
0
votes
0
replies
51
views
updated 5 hours ago by
Ram
43k
•
written 5 hours ago by
samuelkalandarov2002
•
0
1
vote
1
reply
202
views
0
votes
1
reply
114
views
updated 6 hours ago by
Ram
43k
•
written 6 hours ago by
_quantum_girl_
▴
10
0
votes
0
replies
54
views
1
vote
4
replies
552
views
0
votes
0
replies
52
views
6 hours ago by
enferdeflame
•
0
0
votes
0
replies
58
views
0
votes
0
replies
65
views
updated 7 hours ago by
Ram
43k
•
written 8 hours ago by
carlopecoraro2
★
2.5k
1
vote
9
replies
560
views
updated 8 hours ago by
Elisabeth Gasteiger
★
2.4k
•
written 13 hours ago by
Jacky
•
0
0
votes
1
reply
147
views
0
votes
1
reply
155
views
0
votes
0
replies
67
views
updated 7 hours ago by
Ram
43k
•
written 10 hours ago by
carlopecoraro2
★
2.5k
4
votes
2
replies
216
views
0
votes
0
replies
68
views
Tutorial:
DNA Methylation: Sequencing Techniques
0
votes
1
reply
358
views
1
vote
2
replies
218
views
1
vote
4
replies
321
views
0
votes
2
replies
199
views
0
votes
0
replies
73
views
updated 7 hours ago by
Ram
43k
•
written 13 hours ago by
bioinfo223
▴
10
0
votes
0
replies
82
views
13 hours ago by
P.
•
0
0
votes
0
replies
87
views
0
votes
0
replies
118
views
20 hours ago by
renan.igor
•
0
1
vote
1
reply
179
views
updated 16 hours ago by
Ram
43k
•
written 22 hours ago by
anasjamshed
▴
120
3
votes
1
reply
551
views
updated 21 hours ago by
etiennedanis
▴
20
•
written 19 months ago by
DareDevil
★
4.3k
0
votes
0
replies
103
views
0
votes
1
reply
194
views
5
votes
4
replies
428
views
1 hour ago by
BioinfGuru
★
1.7k
1
vote
1
reply
220
views
0
votes
3
replies
325
views
1
vote
1
reply
178
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
jammydodger123456
▴
40
0
votes
1
reply
300
views
0
votes
2
replies
278
views
18 hours ago by
22211020193
•
0
0
votes
0
replies
113
views
1
vote
2
replies
217
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
aniigodwinn
•
0
2
votes
3
replies
314
views
8 hours ago by
valentinatsar
•
0
1
vote
3
replies
225
views
2
votes
10
replies
544
views
2
votes
2
replies
318
views
0
votes
0
replies
212
views
4
votes
2
replies
1.7k
views
2
votes
6
replies
569
views
13 hours ago by
quentinperriere
•
0
Recent Locations •
All
Turkey, 1 minute ago
United States, 1 minute ago
Universe, 2 minutes ago
United States, 3 minutes ago
Sweden, 6 minutes ago
United States, 9 minutes ago
United States, 12 minutes ago
Recent Awards •
All
Commentator to
GenoMax
141k
Centurion to
jkbonfield
★
1.2k
Popular Question to
yueli7
▴
250
Popular Question to
Randy H
▴
110
Popular Question to
ManuelDB
▴
80
Popular Question to
lefthandgergo
▴
10
Recent Replies
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need m…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like:
https://www.rcsb.org/search?requ…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
PDB has a search API: https://search.rcsb.org/#search-example-1
Here's the JSON from your search query:
```
{
"query": {
"type": "grou…
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
•
0
Thank you very much. Actually I looked at there, but actually I want to find something like according to search url like this [QUERY: Gene …
Comment: DEG analysis of RNA-seq data across multiple tissues and two conditions
by
BioinfGuru
★
1.7k
great guidance ... thank you
Comment: error in CPC2
by
Ram
43k
Ashok, what is CPC2? Please edit your post and add as much context as you can.
Comment: python file for cpc2
by
Ram
43k
Ashok - someone else had to (guess and) add context to your post. Please give us as much information as you can in the first place - we can…
Comment: python file for cpc2
by
Pierre Lindenbaum
161k
https://academic.oup.com/nar/article/45/W1/W12/3831091
> CPC2: a fast and accurate coding potential calculator based on sequence intrinsic…
Traffic: 2400 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6