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Recent Replies
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Then what is the best way to do slicing for 1Mb windows? Doing `--intervals` in the GenomicsDBImport?
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> What is your suggestion to run GenomicsDBImport efficiently?
call the GVCF by slices eg: chr1:1000000-2000000<br>
run GenomicsDBImport …
Comment: How to slice a gvcf file with tabix?
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I want to run gatk `GenomicsDBImport` tool to build a GenomicsDB. I want to slice it to reduce the computation time since I have 1300 gvcf …
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Show us the exact call to `cnetplot()` with a sample of all input parameters. Did you compare notes with your friend?
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why would you need to slice a gvcf file ? all the tools in gatk can use a BED / interval / chromosome to narrow the analysis
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I check dataframe it has more than 2 columns
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We write it to csv and then send it via email
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Chromosome names from VCF and input files are not the same.
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See my friend sent me his data frame for me
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That kind of context does not really help. Please show us:
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