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2.7 years ago
Tal
•
0
Hi,
I want to add hg38.patch13 to our DRAGEN system. To do so, I want to generate an autodetection file, so DRAGEN would be able to select the right auxillary files.
We have a supplied autodetect file for patch 10, but it lacks the following fields (which exist for hg38): EH_repeat_specs, ALT_liftover, Somatic_hotspots.
My question is - how can I create an autodetection file for hg38.patch13 which is alt-aware and has the repeat specs and somatic hotsppots? Should I rely on the hg38 files, or are there updated files I should use?
Thanks!
You are likely best off contacting Illumina tech support to get an official answer for this.
Will do. Thank you!
Post their answer here if you get one to provide closure for this thread.