ALT-aware autodetection of hg38.p13 in DRAGEN

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2.7 years ago

Tal • 0

Hi,

I want to add hg38.patch13 to our DRAGEN system. To do so, I want to generate an autodetection file, so DRAGEN would be able to select the right auxillary files.

We have a supplied autodetect file for patch 10, but it lacks the following fields (which exist for hg38): EH_repeat_specs, ALT_liftover, Somatic_hotspots.

My question is - how can I create an autodetection file for hg38.patch13 which is alt-aware and has the repeat specs and somatic hotsppots? Should I rely on the hg38 files, or are there updated files I should use?

Thanks!

alt patch alt-aware dragen hg38 • 739 views

ADD COMMENT • link updated 2.7 years ago by GenoMax 141k • written 2.7 years ago by Tal • 0

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You are likely best off contacting Illumina tech support to get an official answer for this.

ADD REPLY • link 2.7 years ago by GenoMax 141k

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Will do. Thank you!

ADD REPLY • link 2.7 years ago by Tal • 0

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Post their answer here if you get one to provide closure for this thread.

ADD REPLY • link 2.7 years ago by GenoMax 141k

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