Repeat masking custom library not reading
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11 weeks ago
Shri hari ▴ 40

I tried to run repeatmasker with a denovo library prepared by me using repeatmodeler using the following command. ./RepeatMasker -s -x -pa 4 -lib /var/applications/softwares/RepeatMasker/Libraries/combined_consensi.fa /var/applications/softwares/data/sequence.fasta -dir /var/applications/software/data/masked_sequence

But the repeat masker is not recognizing the library and only use the dfam library to mask the genome

Could anyone help me with the same

masking repeat ngs repeatmasker • 144 views
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