How many reads does Delly use for variant calling?
1
0
Entering edit mode
7 weeks ago
gt • 0

Does anyone know how many reads delly uses for variant calling?

DNA-seq bwa-mem delly bowtie2 • 257 views
ADD COMMENT
2
Entering edit mode
7 weeks ago
trausch ★ 1.6k

It uses the entire BAM file and requires at least 2 paired-ends or split-reads to call a variant.

ADD COMMENT
0
Entering edit mode

awesome, thanks!

ADD REPLY
0
Entering edit mode

actually, do you know how many freebayes uses for variant calling?

ADD REPLY

Login before adding your answer.

Traffic: 1029 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6