How many reads does Delly use for variant calling?
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3.4 years ago
gt ▴ 30

Does anyone know how many reads delly uses for variant calling?

DNA-seq bwa-mem delly bowtie2 • 1.2k views
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3.4 years ago
trausch ★ 1.9k

It uses the entire BAM file and requires at least 2 paired-ends or split-reads to call a variant.

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awesome, thanks!

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actually, do you know how many freebayes uses for variant calling?

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Do we need to specify anything for haploid organism , when running Delly caller or it can detect automatically?

Thanks

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