we have used
pacbio technology to sequence our samples (which is only one gene). after demultiplexing and using
ccs tool, now we have one
ccs.bam file per sample.
but we would like to collapse all the sequences (from the same sample which are now in the same
.ccs.bam file) into one sequence which will be used for the downstream analysis.
do you have any experience about the tools and method that we can use.