How to download all sequences of a whole genome shotgun sequencing (WGS) project
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10 weeks ago
geosmin ▴ 10

Is it possible to download all the sequence data of a whole genome shotgun sequencing (WGS) project, using a script and just the master record?

seqrecords wgs ncbi • 210 views
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10 weeks ago

You can directly download from FTP site: https://ftp.ncbi.nlm.nih.gov/genomes/

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Follow the tutorial given by NCBI: https://www.ncbi.nlm.nih.gov/genome/doc/ftpfaq/#downloadservice In this case, you have to download assembly summary file. It contains taxonomy and FTP links of all assemblies. You can simply give a list of FTP links to wget in linux or any download manager for example: IDM or EagleGet.

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