A chord plot for miRNA IDs by GOplot package
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10 weeks ago

Dear all,

I hope all of you be fine and healthy.

I want to create a chord plot by GOplot package. My input data includes miRNA IDs. After performing the subsequent command, I encounter the following error:

chord <- chord_dat(circ, genes, process)
Error in [<-(*tmp*, g, p, value = ifelse(M[g] %in% sub2\$genes, 1,  :
subscript out of bounds


I guess the input data must be gene symbols (not miRNA IDs). Is it right?

I would be grateful if you could guide me to resolve it.

IDs GOplot R package miRNA plot chord • 95 views