A chord plot for miRNA IDs by GOplot package
Entering edit mode
10 weeks ago

Dear all,

I hope all of you be fine and healthy.

I want to create a chord plot by GOplot package. My input data includes miRNA IDs. After performing the subsequent command, I encounter the following error:

chord <- chord_dat(circ, genes, process)
Error in `[<-`(`*tmp*`, g, p, value = ifelse(M[g] %in% sub2$genes, 1,  : 
  subscript out of bounds

I guess the input data must be gene symbols (not miRNA IDs). Is it right?

I would be grateful if you could guide me to resolve it.

IDs GOplot R package miRNA plot chord • 95 views

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