Analysing RNA seq data
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19 months ago
windsur ▴ 20

Hello all! I am new analysing RNA-seq data. They give me a directory containing: 1 normal sample and 15 tumor samples, each one has its cel file, exp file, and dcl file. They ask me to do a reanalysis, but I think I need more information, like the plataform (e.g. affimetrix) and the annotation database. Am I correct? How should I proced to do the analysis? I have followed this tutorial, but I do not have all the data here. Is there a way to get the probe annotation or is something that they should give me?

Thanks!!

Updated:

My CEL files look like that:

sample

rna-seq annotation bioconductor • 670 views
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19 months ago
Wakala ▴ 10

You should get the GPL number

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This is the first time that I am trying to analyse a microarray. Do you know if I can get the GPL from another source? thanks!

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Usually you can get the GPL form where the data from´╝îyou should ask the one who give you the data or the company that performed the sequencing.

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