Sortmerna error
0
0
Entering edit mode
10 weeks ago
Stella • 0

Hello, I am facing this error in one of my files during sortmerna

[split:646] ERROR: Failed deflating readstring: @A00489:986:HGYHKDRXY:1:2123:9824:27242 1:N:0:CAGTGCTT+ACCTGGAA
CGGCTGCCTCTCAGGGGCGGTGGGGGGCGCGGCCGGCAGCGGCCCGCGGGGCGCGGGGGGCACCGAGTCGCTGCTGAAGTCCAGCAGCGGTGCGGCGGCGGGGGGCACCGGAGCCGCGGACAGCCCGGCTGCGGGCTTCCTCTCCAGCAC
+
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF::FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFFFFFFFFFFFFFFF:F:FFFFFFFFF

And more errors coming up later, with the run being completely aborted at the end

[write_a_read:190] ERROR: Failed deflating readstring: [write_a_read:190] ERROR: zlib status: -1

I have used the tool before many times and in this run all the other samples are also working without errors.

The md5sum doesn't show corruption during transfer and the reads have the same number in both reads.

Has anyone seen it before? Many thanks in advance!

rrna rnaseq sortmerna • 106 views
ADD COMMENT

Login before adding your answer.

Traffic: 2425 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6