Accuracy Assembly's contigs
0
0
Entering edit mode
3.2 years ago

Hi guys I did denovo assembly with velvet for the MT(Mitochondrion) genome. Velvet made contigs for me. How

can I check assembly output? Is there any valid website for checking output?

Best wish

...

NGS Assembly whole genome Velvet • 909 views
ADD COMMENT
1
Entering edit mode

http://cab.cc.spbu.ru/quast/

Something like this?

Else, back map your reads and check with IGV or any genome viewer of your choice, pretty much like SQUAT's approach, or align your mitochondirial sequence to a reference sequence.

ADD REPLY
0
Entering edit mode

yes,

tnx a lot

ADD REPLY

Login before adding your answer.

Traffic: 1276 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6