Accuracy Assembly's contigs
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8 weeks ago

Hi guys I did denovo assembly with velvet for the MT(Mitochondrion) genome. Velvet made contigs for me. How

can I check assembly output? Is there any valid website for checking output?

Best wish

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NGS Assembly whole genome Velvet • 186 views
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http://cab.cc.spbu.ru/quast/

Something like this?

Else, back map your reads and check with IGV or any genome viewer of your choice, pretty much like SQUAT's approach, or align your mitochondirial sequence to a reference sequence.

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yes,

tnx a lot

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