I did denovo assembly with velvet for the MT(Mitochondrion) genome. Velvet made contigs for me. How
can I check assembly output? Is there any valid website for checking output?
Something like this?
Else, back map your reads and check with IGV or any genome viewer of your choice, pretty much like SQUAT's approach, or align your mitochondirial sequence to a reference sequence.
tnx a lot
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