Entering edit mode
2.7 years ago
askari.arezou94
▴
30
Hi guys I did denovo assembly with velvet for the MT(Mitochondrion) genome. Velvet made contigs for me. How
can I check assembly output? Is there any valid website for checking output?
Best wish
...
http://cab.cc.spbu.ru/quast/
Something like this?
Else, back map your reads and check with IGV or any genome viewer of your choice, pretty much like SQUAT's approach, or align your mitochondirial sequence to a reference sequence.
yes,
tnx a lot