I am curious if it is possible to convert a VCF-File (with multiple samples) in a Format whith 5 columns.
- Column should be Sample ID
- Column: Position on the chromosome
- Number of reads covering site
- QUAL phred-scaled quality score for the assertion made in ALT.
May there is allready a tool which can perform this, or if I need to do it myself may you can recommend me a good programm (like awk or sed) and recommend me a code.
Aim of this should be that afterwards i can filter variants via Quality score and number of reads covering site.
Thanks a lot in advance