Base Recalibration -Second recalibration table
0
0
Entering edit mode
10 months ago
priya.bmg ▴ 20

Hello

I need some advice in the base recalibration step. I have build the recalibration model and have got the recalibrated bam file. To create the after model to estimate the remaining error, should I give the recalibrated bam file as input or the original bam file as input?. I am in the step to create the second recalibration table. But, not sure if the model estimates the remaining error using the recalibrated bam file.

Thanks

base GATK NGS recalibration • 235 views
ADD COMMENT

Login before adding your answer.

Traffic: 1408 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6