How to make the distrubution of DEGs using RNAseq data

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2.7 years ago

minhcongktyhp • 0

Hi all. I am analyzing RNAseq data and I found a very nice paper titled: Dose-dependent transcriptomic responses of zebrafish eleutheroembryos to Bisphenol A And they draw a very nice graph, is there anyone can help me to design the same graph. Thank you so much. enter image description here I appreciate your support

RNAseq network R • 575 views

ADD COMMENT • link updated 2.7 years ago by Carlo Yague 8.7k • written 2.7 years ago by minhcongktyhp • 0

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It looks like a two-components network, with the nodes being either proteins (the colored circles) or GO terms (directly labelled on white circles). The edges represent association of the genes to the GO terms. To draw such a network, a good option is to use cytoscape, for which there is a very good a manual and a lot of tutorial around.

ADD REPLY • link 2.7 years ago by Carlo Yague 8.7k

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