Violin plot with statistics
0
0
Entering edit mode
2.7 years ago
tomer9w • 0

Hi I am using Seurat for scRNA-Seq analysis. Along the analysis, i used Seurat's VlnPlot function as the following: VlnPlot(Myeloid.object, features = 'Mki67', split.by = 'Sample', pt.size = 0)

The feature is then represented in a different color for each Sample, and is divided by cluster.

I want to add statistics the each cluster, and check whether the expression of that gene is significantly up\down regulated upon treatment. Is there any smart way of adding statistics (**) and lines that defines the groups compared the this ggplot that takes into account the nature of the data (single cell RNA sequencing)?

Thanks!

vlnplot violionplot scRNAseq seurat • 1.1k views
ADD COMMENT

Login before adding your answer.

Traffic: 2346 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6