FreeBayes Error

Question

[Julia]

Hi- I am trying to use FreeBayes to identify polymorphic sites and it will not run. It keeps throwing this error "unable to find fasta index entry for GL630349". Does anyone know what to do in this situation? Thank you

Answer 1

[Jianyu]

Try samtools index, I found some posts with similar issues:

https://biostars.org/p/240572/

Unable to find FASTA index entry for '1'