Single-cell RNA Seq on whole organ or whole tissue with known cell origins
1
0
Entering edit mode
2.5 years ago

Hello,

I am looking for single-cell RNA Seq data on the whole organ/whole tissue with known cell origins.

E.g. 1. Single-cell seq on the whole mouse brain, and the single-cell origins (cortex, hippocampus, cerebellum, etc.) are inferred/annotated. 2. Single-cell seq on the Arabidopsis whole root, and the single-cell origins (cortex, stele, endodermis, etc.) are known/annotated. 3. Single-cell seq on whole tissue of the pancreas, and the cell origins (sub-tissue A, B, C, etc.) are known/annotated.

Based on my research, it seems most single-cell seq data only identify cell types rather than cell origins. Does anyone know any single-cell data as I described?

Thank you in advance!

known-cell-origin whole-organ single-cell-RNA-Seq whole-tissue • 809 views
ADD COMMENT
1
Entering edit mode
2.5 years ago
tomas4482 ▴ 390

If by "origins" you mean the anatomically defined subdivision of a tissue, yes, plenty. Single cell protal works for you. An example https://singlecell.broadinstitute.org/single_cell/study/SCP1/-single-nucleus-rna-seq-of-cell-diversity-in-the-adult-mouse-hippocampus-snuc-seq

ADD COMMENT
0
Entering edit mode

Thank you!

ADD REPLY

Login before adding your answer.

Traffic: 2328 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6