Annotation Forge Error: makeOrgPackageFromNCBI

Question

[Trinh]

Hi, I just run a code inherited from a recent nature paper: https://github.com/RoundLab/Ost_CandidaRNASeq However, I got a lot of errors with annotation forge. Would you please help me? Yesterday, I had another error. Today I have rerun it, and I got another error. :(

    library("biomaRt")
    library("GenomeInfoDb")
    library(AnnotationDbi)
    library(Biobase)
    library(AnnotationForge)
    library("GO.db")


    path1<-tcltk::tk_choose.dir(getwd(), "Choose the folder for Analysis")
    # A window will popup and ask you to select the folder containg the data  
    setwd(path1)
    path1

    makeOrgPackageFromNCBI(version = "0.1", 
                           author = "Trinh Phan-Canh <[e-mail]>", 
                           maintainer = "Trinh Phan-Canh <[e-mail]>", 
                           outputDir = "data", 
                           tax_id = "237561", genus = "Candida", species =  "albicans")


If files are not cached locally this may take awhile to assemble a 12 GB cache databse in the NCBIFilesDir directory. Subsequent calls to this function should be faster (seconds). The cache will try to rebuild once per day.
preparing data from NCBI ...
starting download for 
[1] gene2pubmed.gz
[2] gene2accession.gz
[3] gene2refseq.gz
[4] gene_info.gz
[5] gene2go.gz
getting data for gene2pubmed.gz
extracting data for our organism from : gene2pubmed
getting data for gene2accession.gz
extracting data for our organism from : gene2accession
getting data for gene2refseq.gz
extracting data for our organism from : gene2refseq
getting data for gene_info.gz
extracting data for our organism from : gene_info
getting data for gene2go.gz
extracting data for our organism from : gene2go
processing gene2pubmed
processing gene_info: chromosomes
processing gene_info: description
processing alias data
processing refseq data
processing accession data
processing GO data
Error in function (type, msg, asError = TRUE)  : 
  error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version